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FINDSEQUENCE

FINDSEQUENCE allows peptide or protein sequences to be extracted from a local copy of the PIR database. The sequences in the database are held in a modified format, and when extracted are in the form of single- or multi-sequence files suitable for input to PRESTO or INTERCHEM.

Searching of the database uses character strings to represent words (or parts of words) in the titles of the sequences or codons, or to represent subsequences in the complete sequence. Up to three strings may be specified. Limited boolean logic may be applied to these three strings.

Revised 18th June 2007